Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs213755 chr1:41595165 G/T 1.28E-7 500 27.33 30.53 31.9 KM Plot
THCA rs213756 chr1:41595081 C/T 1.28E-7 500 27.33 30.53 31.9 KM Plot
THCA rs213761 chr1:41591134 T/C 1.28E-7 500 27.33 30.53 31.9 KM Plot
THCA rs213762 chr1:41583610 T/C 1.58E-7 502 27.1 30.53 31.87 KM Plot
THCA rs213763 chr1:41583526 C/T 1.6E-7 502 27.1 30.53 31.92 KM Plot
THCA rs213764 chr1:41583069 A/G 1.64E-7 500 27.1 30.53 32.02 KM Plot
THCA rs213766 chr1:41581963 T/C 1.6E-7 502 27.1 30.53 31.9 KM Plot
THCA rs213767 chr1:41581312 A/G 1.6E-7 502 27.1 30.53 31.9 KM Plot
THCA rs213768 chr1:41618442 A/T 7.3E-5 500 27.57 30.53 31.87 KM Plot
THCA rs2144788 chr1:41532444 G/A 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs2144790 chr1:41519800 A/G 1.22E-7 501 27.33 30.48 31.93 KM Plot
THCA rs2159213 chr19:2136102 T/C 0.000131 493 32.03 31.6 31.45 KM Plot
THCA rs2223684 chr20:47354880 A/C 8.25E-9 503 31.53 32.07 18.22 KM Plot
THCA rs2230214 chr9:123782299 G/A 2.7E-5 503 31.7 31.47 21.97 KM Plot
THCA rs2236137 chr14:23558850 T/G 5.44E-15 498 31.7 31.93 12.97 KM Plot